SNP Profiles matching IMC 2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
1._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
2._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
3._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
4._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
5._RUQ_828	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
6._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
7._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
8._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
9._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
10._RUQ_862	TT	CC	CC	TT	CC	GG	AC	CC	AG	CT	AA	GG	AT	CC
11._RUQ_1590	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	GG	GG	AA	CC
12._RUQ_734	TT	CC	AC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	GT	CG	AC	CT	CC	TT	GT	GG	TT	AC	CC
1._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
2._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
3._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
4._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
5._RUQ_828	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
6._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
7._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
8._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
9._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
10._RUQ_862	AG	AC	CC	GT	CG	AC	CC	CC	TT	GT	GG	TT	CC	CC
11._RUQ_1590	AA	AC	CC	GT	CG	AC	CT	CC	TT	GG	GG	TT	AC	CC
12._RUQ_734	AA	AC	CC	GG	GG	AC	CT	CC	TT	GG	GG	TT	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CC	GG	GG	TT	TT	CT	CC	TT	GG	AG
1._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
2._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
3._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
4._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
5._RUQ_828	_	CT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
6._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
7._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
8._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
9._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
10._RUQ_862	CC	CC	AA	CC	CC	GG	GG	TT	GT	TT	CC	TT	GG	AG
11._RUQ_1590	CC	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	TT	GG	AG
12._RUQ_734	CC	TT	AA	CC	CC	GG	GG	TT	TT	CT	CC	TT	GG	AG

Input profile: IMC_2 RUQ_828

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

3._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

4._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._IMC_2 RUQ_828

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

9._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._IMC_103 RUQ_862

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._IMC_50 RUQ_1590

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._IMC_71 RUQ_734

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484